Hg_chrom9_TN10mRNA_17632
Organism: Heterodera glycines Gene Locus: chr9:5099726-5104760 Feature type: polypeptideProtein Sequence
Length: 1,321
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.215 | 0.922 | 0.235 | 1.653 | 2.717 | 0.433 | 1.514 | 0.959 | 1.166 | 1.158 | 1.069 | 0.631 | 1.15 | 0.989 | 1.438 | 0.757 | 0.619 | 0.233 | 0.312 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16666
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_18447
|
— |
8-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
nucleus
|
KEREEGRRK,KRMGYSEQEREKLRTR
|
— | — | — | — |
1-34
|
0.803
|
0.923
|
0.000
|
0.000
|
0.368
|
0.119
|
0.025
|
0.466
|
0.558
|
0.086
|
0.235
|
0.151
|
0.305
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004971
|
1.000
|
2.000
|
Hsc_gene_18448.t1;Hsc_gene_8744.t1
|
Hsc_gene_18447.t1;Hsc_gene_18448.t1;Hsc_gene_8744.t1
|
— | — |
CRZ25450.1 Bm5427 [Brugia malayi]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
165-671;823-1201;1239-1321
|
3.000
|
1-164;672-822;1202-1238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
149094.660
|
5.976
|
-13.000
|
30.507
|
6.662
|
61.014
|
38.986
|
15.519
|
14.989
|
45.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
tan
|
3879.886
|
3921.882
|
2845.148
|
2836.593
|
3520.840
|
4934.602
|
4318.690
|
4030.596
|
6892.474
|
1902.014
|
4040.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.692
|
-0.605
|
— |
0.280
|
0.502
|
-0.182
|
-0.396
|
0.242
|
1.744
|
-1.113
|
— | — | — |