Hg_chrom9_TN10mRNA_17633
Organism: Heterodera glycines Gene Locus: chr9:5105831-5108209 Feature type: polypeptideProtein Sequence
Length: 452
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 1.338 | 1.006 | 0.534 | 0.996 | 0.908 | 0.606 | 1.549 | 1.672 | 1.106 | 0.67 | 1.562 | 1.905 | 1.234 | 0.993 | 1.043 | 1.088 | 0.57 | 1.872 | 1.171 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
mitochondria
|
— |
44-68
|
0.946
|
— | — |
1-21
|
0.739
|
0.844
|
0.000
|
0.000
|
0.034
|
0.067
|
0.002
|
0.111
|
0.188
|
0.258
|
0.275
|
0.065
|
0.789
|
0.298
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013002
|
1.000
|
1.000
|
Hsc_gene_18446.t1
|
Hsc_gene_18446.t1
|
— |
Q19076.1 Intestinal acid phosphatase [Caenorhabditis elegans]
|
KAF7636024.1 Acid phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.777|GO:0110165_0.776|GO:0008150_0.723|GO:0016020_0.668|GO:0009987_0.657|GO:0003674_0.614|GO:0005622_0.555|GO:0043226_0.507|GO:0003824_0.506
|
IPR000560+25-375+|IPR029033+19-410_23-423+|IPR033379+26-40+|IPR050645+21-406+
|
— |
PF00328+25-375+Histidine_phosphatase_superfamily_(branch_2)
|
— |
PTHR11567+21-406+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
52338.450
|
6.148
|
-3.000
|
23.894
|
16.372
|
47.124
|
52.876
|
12.389
|
11.504
|
46.460
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
884.718
|
1130.137
|
741.441
|
1005.682
|
1166.544
|
1100.560
|
1245.915
|
815.388
|
750.672
|
605.513
|
667.724
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.838
|
-0.305
|
0.549
|
0.182
|
— |
0.189
|
-0.538
|
0.754
|
— | — | — | — | — |