Hg_chrom9_TN10mRNA_17634
Organism: Heterodera glycines Gene Locus: chr9:5110882-5114976 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.774 | 1.263 | 0.923 | 0.664 | 1.08 | 1.347 | 0.438 | 1.401 | 1.051 | 1.728 | 0.929 | 1.545 | 1.557 | 0.741 | 0.894 | 1.126 | 0.746 | 0.823 | 1.347 | 0.876 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16668
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.533
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.026
|
— | — |
0.387
|
0.184
|
0.012
|
0.617
|
0.182
|
0.276
|
0.230
|
0.093
|
0.201
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013003
|
1.000
|
1.000
|
Hsc_gene_18445.t1
|
Hsc_gene_18445.t1
|
— |
P28575.3 Actin-binding protein IPP [Mus musculus]
|
KAF7639235.1 BTB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.813|GO:0005575_0.748|GO:0110165_0.730|GO:0009987_0.657|GO:0005622_0.634
|
IPR000210+74-178_83-151_83-181+|IPR011333+61-214_68-176+|IPR011705+192-302_198-300+|IPR051481+67-361+
|
SM00225+83-181+|SM00875+192-302+
|
PF00651+74-178+BTB/POZ_domain|PF07707+198-300+BTB_And_C-terminal_Kelch
|
— |
PTHR24410+67-361+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60
|
1.000
|
61-571
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
65519.180
|
6.701
|
2.000
|
24.869
|
13.135
|
47.986
|
52.014
|
13.310
|
11.559
|
44.483
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1415.770
|
1158.190
|
1805.414
|
573.439
|
476.233
|
1221.587
|
1026.459
|
4557.666
|
1454.313
|
1046.140
|
1221.071
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.411
|
-1.151
|
-1.546
|
-0.300
|
1.374
|
-0.240
|
1.801
|
-2.010
|
— | — | — | — |
-3.580
|
No JSON data available for plots.