Hg_chrom9_TN10mRNA_17635
Organism: Heterodera glycines Gene Locus: chr9:5115016-5117683 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.183 | 1.099 | 1.432 | 1.358 | 1.181 | 1.817 | 1.219 | 0.787 | 0.525 | 0.213 | 1.074 | 0.926 | 0.219 | 1.666 | 1.446 | 1.462 | 1.678 | 0.597 | 1.211 | 0.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16669
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKKSKCCCIYKKKRSW
|
— | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.204
|
0.001
|
0.575
|
0.187
|
0.056
|
0.049
|
0.024
|
0.087
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013004
|
1.000
|
1.000
|
Hsc_gene_18444.t1
|
Hsc_gene_18444.t1
|
— | — |
KAI1728455.1 protein phosphatase inhibitor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.430
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004865|GO:0032515
|
— |
IPR011107+2-111_37-89+
|
— |
PF07491+37-89+Protein_phosphatase_inhibitor
|
— |
PTHR20835+2-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-127
|
0.000
|
— |
8u5g_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
13923.090
|
6.450
|
0.000
|
30.709
|
4.724
|
62.992
|
37.008
|
15.748
|
14.961
|
61.417
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
371.922
|
395.851
|
348.681
|
375.841
|
497.309
|
456.313
|
773.705
|
362.321
|
313.991
|
187.909
|
241.945
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.413
|
-0.212
|
0.217
|
0.372
|
— |
0.772
|
-0.437
|
1.237
|
— | — | — | — | — |
No JSON data available for plots.