Hg_chrom9_TN10mRNA_17637
Organism: Heterodera glycines Gene Locus: chr9:5119482-5125306 Feature type: polypeptideProtein Sequence
Length: 975
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.145 | 0.883 | 0.951 | 0.743 | 0.632 | 1.42 | 0.684 | 1.795 | 0.934 | 1.58 | 0.606 | 1.267 | 1.026 | 1.321 | 1.423 | 1.304 | 0.723 | 0.808 | 0.71 | 0.271 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16671
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.774
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKMSFLSADGRLEDRRGSR
|
10-35
|
0.955
|
61-82
|
0.996
|
— | — |
0.000
|
— | — |
0.285
|
0.381
|
0.013
|
0.670
|
0.211
|
0.239
|
0.178
|
0.085
|
0.141
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013005
|
1.000
|
1.000
|
Hsc_gene_18443.t1
|
Hsc_gene_18443.t1
|
— |
Q9P7X5.1 Protein kinase domain-containing protein ppk32 [Schizosaccharomyces pombe 972h-]
|
KAI1726846.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.821|GO:0110165_0.818|GO:0008150_0.807|GO:0009987_0.758|GO:0005622_0.728|GO:0003674_0.615|GO:0016020_0.558|GO:0005737_0.523|GO:0043226_0.510
|
IPR000719+142-435_173-430_203-424+|IPR011009+195-432+|IPR011989+432-671+|IPR016024+431-659+|IPR051177+142-907+
|
SM00220+173-430+
|
PF00069+203-424+Protein_kinase_domain
|
— |
PTHR12984+142-907+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-144;801-975
|
1.000
|
145-800
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.879
|
106906.380
|
9.076
|
36.500
|
23.590
|
9.128
|
46.462
|
53.538
|
14.564
|
9.026
|
52.513
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
563.207
|
1069.190
|
784.380
|
355.016
|
280.909
|
563.134
|
555.816
|
504.147
|
918.836
|
232.682
|
526.748
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.676
|
-1.728
|
-1.035
|
-0.369
|
1.017
|
— | — | — | — | — |
2.641
|
— | — |
No JSON data available for plots.