SCN Proteipedia

Hg_chrom9_TN10mRNA_17638

Organism: Heterodera glycines Gene Locus: chr9:5129749-5134563 Feature type: polypeptide

Protein Sequence

Length: 624

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.801	1.044	0.816	0.995	0.668	1.233	0.572	1.042	1.068	1.603	0.413	2.262	1.113	1.109	1.439	1.099	0.893	1.117	1.356	0.943	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom9_TN10gene_16672	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	KRKL	38-61	0.796	—	—	—	—	0.000	—	—	0.063	0.128	0.020	0.157	0.198	0.189	0.301	0.017	0.782	0.095

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0013006	1.000	1.000	Hsc_gene_18442.t1	Hsc_gene_18442.t1	—	Q17328.1 Glutamate-gated chloride channel subunit beta [Caenorhabditis elegans]	KAI1729757.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	-0.160

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.970\|GO:0009987_0.938\|GO:0005575_0.925\|GO:0110165_0.925\|GO:0016020_0.894\|GO:0065007_0.867\|GO:0071944_0.859\|GO:0051179_0.851\|GO:0006810_0.850\|GO:0051234_0.850\|GO:0005886_0.845\|GO:0050789_0.845\|GO:0003674_0.809\|GO:0023052_0.803\|GO:0007154_0.800\|GO:0055085_0.780\|GO:0006811_0.760\|GO:0034220_0.756\|GO:0050896_0.744\|GO:0050794_0.741\|GO:0007267_0.705\|GO:0032501_0.704\|GO:0030054_0.701\|GO:0051716_0.696\|GO:0005215_0.683\|GO:0022857_0.683\|GO:0007268_0.682\|GO:0045202_0.682\|GO:0098916_0.682\|GO:0099536_0.682\|GO:0099537_0.682\|GO:0005216_0.678\|GO:0015075_0.678\|GO:0015267_0.678\|GO:0022803_0.678\|GO:0007165_0.649\|GO:0022836_0.641\|GO:0065008_0.636\|GO:0098660_0.615\|GO:0015276_0.611\|GO:0022834_0.611\|GO:0005230_0.584\|GO:0003008_0.577\|GO:0006820_0.577\|GO:0006821_0.577\|GO:0015698_0.577\|GO:0098656_0.573\|GO:0042391_0.571\|GO:0015318_0.555\|GO:0098661_0.550\|GO:1902476_0.547\|GO:0008509_0.535\|GO:0007166_0.532\|GO:0050877_0.531\|GO:0005253_0.526\|GO:0015103_0.512\|GO:0015108_0.508\|GO:0098590_0.504	IPR006028+331-351_357-378_391-412_591-611+\|IPR006029+335-416+\|IPR006201+87-610_110-455_158-174_197-208_243-257_322-334+\|IPR006202+109-326+\|IPR018000+243-257+\|IPR036719+328-618+\|IPR036734+107-325_108-326+\|IPR038050+326-624+	—	PF02931+109-326+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+335-416+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+110-455+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-624	4tnw_T	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.785	70547.810	8.301	14.500	20.353	11.058	42.788	57.212	11.859	8.494	49.840

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	tan	425.817	207.861	1091.424	354.649	119.413	101.387	56.905	340.780	542.814	603.681	577.595

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.163	0.633	-1.513	-1.601	—	-0.824	1.648	-2.442	—	—	—	—	8.249

No JSON data available for plots.

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