Hg_chrom9_TN10mRNA_17639
Organism: Heterodera glycines Gene Locus: chr9:5138775-5144062 Feature type: polypeptideProtein Sequence
Length: 746
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.091 | 0.904 | 0.804 | 0.647 | 0.894 | 0.55 | 0.654 | 0.804 | 1.221 | 1.431 | 0.569 | 2.129 | 1.862 | 0.619 | 1.122 | 1.226 | 0.857 | 1.259 | 1.65 | 0.789 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16673
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RNAKRLK
|
39-70
|
0.956
|
— | — | — | — |
0.000
|
— | — |
0.094
|
0.057
|
0.008
|
0.119
|
0.321
|
0.636
|
0.536
|
0.018
|
0.592
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003717
|
2.000
|
1.000
|
Hsc_gene_18441.t1
|
Hsc_gene_18441.t1
|
— |
Q9XWL9.3 Patched-related protein 18 [Caenorhabditis elegans]
|
KAI6172539.1 Patched domain-containing protein 3 [Aphelenchoides besseyi];KAI6194874.1 Patched domain-containing protein 3 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.845|GO:0110165_0.845|GO:0016020_0.788|GO:0071944_0.787|GO:0005886_0.780|GO:0008150_0.774|GO:0009987_0.618|GO:0043226_0.524|GO:0005622_0.522
|
IPR000731+48-217+|IPR003392+2-710+|IPR051697+2-713+
|
— |
PF02460+2-710+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+516-713+PaTched_Related_family
|
PTHR10796+2-713+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-295
|
2.000
|
1-247;296-746
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
83452.720
|
6.756
|
2.000
|
20.643
|
13.137
|
40.483
|
59.517
|
10.858
|
9.786
|
50.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
309.440
|
333.968
|
375.725
|
168.200
|
160.736
|
81.958
|
116.867
|
126.802
|
607.951
|
386.243
|
481.261
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.127
|
-1.051
|
— |
-0.958
|
0.523
|
0.526
|
— | — | — | — | — | — |
No JSON data available for plots.