Hg_chrom9_TN10mRNA_17640
Organism: Heterodera glycines Gene Locus: chr9:5148709-5154426 Feature type: polypeptideProtein Sequence
Length: 827
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.872 | 0.787 | 1.077 | 0.792 | 1.411 | 1.209 | 0.734 | 1.632 | 1.048 | 0.964 | 0.788 | 1.28 | 1.276 | 0.744 | 1.604 | 1.054 | 0.892 | 0.861 | 0.837 | 0.925 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16674
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RHRR,RADKRKA,RRRRKRRGWAQKRGKA,AGRRRRKRRGWAQKRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.082
|
0.180
|
0.024
|
0.155
|
0.198
|
0.223
|
0.224
|
0.009
|
0.816
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004972
|
1.000
|
2.000
|
Hsc_gene_18439.t1;Hsc_gene_18439.t2
|
Hsc_gene_18439.t1;Hsc_gene_18439.t2
|
— |
P17971.2 Potassium voltage-gated channel protein Shal [Drosophila melanogaster]
|
KAI1729683.1 ion transport protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0005249|GO:0005515|GO:0006811|GO:0006813|GO:0008076|GO:0016020|GO:0051260|GO:0055085
|
GO:0008150_0.934|GO:0009987_0.901|GO:0005575_0.893|GO:0110165_0.893|GO:0006810_0.891|GO:0051179_0.891|GO:0051234_0.891|GO:0071944_0.868|GO:0005886_0.863|GO:0016020_0.863|GO:0055085_0.861|GO:0003674_0.849|GO:0005215_0.849|GO:0005216_0.849|GO:0006811_0.849|GO:0015075_0.849|GO:0015267_0.849|GO:0022803_0.849|GO:0022857_0.849|GO:0034220_0.849|GO:0022836_0.829|GO:0098660_0.811|GO:0005261_0.809|GO:0006812_0.809|GO:0008324_0.809|GO:0098655_0.809|GO:0030001_0.793|GO:0015318_0.770|GO:0098662_0.756|GO:0022890_0.746|GO:0046873_0.746|GO:0005244_0.712|GO:0022832_0.712|GO:0006813_0.694|GO:0071805_0.690|GO:0022843_0.686|GO:0015079_0.651|GO:0005267_0.645|GO:0005249_0.634|GO:0065007_0.594|GO:0098590_0.584|GO:0030054_0.571|GO:0045202_0.528|GO:0032991_0.507|GO:0050789_0.503
|
IPR000210+44-113_46-145+|IPR003131+49-137+|IPR003968+87-97_301-309_325-339_396-407+|IPR003975+73-86_164-178_183-197_222-238_320-339_417-428_431-447_477-491+|IPR005821+189-418+|IPR011333+1-149_47-149+|IPR021645+3-27+|IPR027359+158-308+
|
SM00225+46-145+
|
PF00520+189-418+Ion_transport_protein|PF02214+49-137+BTB/POZ_domain|PF11601+3-27+Shal-type_voltage-gated_potassium_channels,_N-terminal
|
G3DSA:1.10.287.70:FF:000028+309-418+potassium_voltage-gated_channel_subfamily_D_member_3|G3DSA:1.20.120.350:FF:000016+160-308+Potassium_voltage-gated_channel_subfamily_D_member_3|G3DSA:3.30.710.10:FF:000004+1-149+Potassium_voltage-gated_channel_subfamily_D_member_3
|
PTHR11537+46-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
491-827
|
1.000
|
1-490
|
7w3y_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
94120.860
|
6.654
|
2.500
|
30.713
|
12.092
|
51.632
|
48.368
|
16.324
|
14.389
|
47.642
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
902.566
|
819.024
|
1899.934
|
999.800
|
372.655
|
323.327
|
228.462
|
1185.723
|
1301.570
|
786.704
|
1007.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.984
|
0.150
|
-0.817
|
-1.455
|
— |
-0.492
|
1.774
|
-2.236
|
— | — | — | — | — |
No JSON data available for plots.