Hg_chrom9_TN10mRNA_17641
Organism: Heterodera glycines Gene Locus: chr9:5154612-5159483 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.852 | 1.096 | 0.524 | 3.611 | 0.742 | 1.544 | 1.06 | 0.654 | 0.756 | 0.814 | 0.436 | 0.77 | 1.236 | 1.963 | 0.855 | 1.122 | 0.386 | 0.674 | 0.403 | 1.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.714
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.145
|
0.088
|
0.041
|
0.279
|
0.076
|
0.106
|
0.076
|
0.014
|
0.163
|
0.940
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013007
|
1.000
|
1.000
|
Hsc_gene_18438.t1
|
Hsc_gene_18438.t1
|
— | — |
KAF7636105.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006149+157-209_221-265+|IPR006150+60-97_281-326_337-377+
|
SM00289+60-97_281-326_337-377+
|
PF01683+157-209_221-265+EB_module
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-382
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
41645.420
|
6.748
|
1.500
|
15.707
|
12.565
|
36.649
|
63.351
|
8.377
|
7.330
|
59.162
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
725.339
|
130.382
|
256.063
|
207.464
|
170.249
|
117.975
|
64.593
|
181.795
|
588.899
|
2308.487
|
1571.521
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.745
|
0.533
|
-0.195
|
-0.316
|
-0.515
|
-0.859
|
0.519
|
-1.351
|
— | — |
-3.704
|
— | — |
No JSON data available for plots.