Hg_chrom9_TN10mRNA_17646
Organism: Heterodera glycines Gene Locus: chr9:5179233-5181048 Feature type: polypeptideProtein Sequence
Length: 430
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.082 | 0.973 | 1.099 | 0.561 | 1.085 | 2.027 | 0.775 | 0.698 | 0.827 | 1.194 | 0.881 | 0.821 | 1.034 | 0.716 | 2.088 | 0.93 | 0.839 | 0.81 | 0.716 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRAQTAKARQAKLAKR,RTPRGRPKKRFAEKKG,KRPNDDDDKENRTPRGRPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.942
|
0.090
|
0.021
|
0.181
|
0.029
|
0.025
|
0.030
|
0.035
|
0.036
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000386
|
2.000
|
6.000
|
Hsc_gene_22157.t1;Hsc_gene_23968.t1;Hsc_gene_24569.t1;Hsc_gene_24569.t2;Hsc_gene_5593.t1;Hsc_gene_5593.t2
|
Hsc_gene_5593.t1;Hsc_gene_5593.t2
|
— | — | — |
MEE8173172
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+242-419+
|
— |
PF06918+242-419+Protein_of_unknown_function_(DUF1280)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-204
|
1.000
|
205-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
48407.630
|
10.129
|
18.000
|
30.000
|
7.209
|
53.721
|
46.279
|
17.442
|
12.558
|
48.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
purple
|
83.137
|
31.421
|
47.119
|
64.513
|
48.164
|
104.123
|
86.077
|
50.960
|
59.651
|
156.845
|
115.191
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.902
|
0.561
|
-0.454
|
1.127
|
— |
-1.133
|
0.897
|
— | — | — | — | — |
No JSON data available for plots.