Hg_chrom9_TN10mRNA_17647
Organism: Heterodera glycines Gene Locus: chr9:5181369-5185388 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.229 | 0.686 | 1.296 | 0.593 | 1.188 | 1.386 | 0.527 | 1.72 | 1.037 | 1.793 | 0.633 | 1.156 | 1.092 | 0.425 | 1.203 | 0.702 | 0.886 | 1.191 | 0.756 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16681
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.486
|
0.180
|
0.018
|
0.548
|
0.149
|
0.319
|
0.276
|
0.007
|
0.073
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004560
|
2.000
|
1.000
|
Hsc_gene_18433.t1
|
Hsc_gene_18433.t1;Hsc_gene_18433.t2
|
— |
Q94261.1 COP9/Signalosome and eIF3 complex-shared subunit 1 [Caenorhabditis elegans]
|
KAH7729366.1 COP9/Signalosome and eIF3 complex-shared subunit 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.895|GO:0005575_0.791|GO:0110165_0.787|GO:0009987_0.759|GO:0005622_0.726|GO:0032991_0.575|GO:0016020_0.502
|
IPR000717+203-370_286-365_298-388+|IPR045237+191-401+
|
SM00088+298-388+
|
PF01399+286-365+PCI_domain
|
— |
PTHR15350+191-401+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
45668.220
|
5.185
|
-10.000
|
27.764
|
10.319
|
46.437
|
53.563
|
13.514
|
14.251
|
47.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
1727.938
|
779.381
|
1075.145
|
2570.197
|
2956.261
|
2458.259
|
2299.521
|
811.982
|
731.994
|
2154.202
|
1544.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.235
|
1.584
|
1.366
|
0.169
|
-0.251
|
— |
-1.704
|
1.645
|
— | — | — | — | — |
No JSON data available for plots.