Hg_chrom9_TN10mRNA_17650
Organism: Heterodera glycines Gene Locus: chr9:5193509-5198579 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.548 | 1.024 | 0.915 | 0.976 | 0.891 | 0.564 | 0.487 | 1.887 | 0.839 | 1.19 | 0.524 | 1.665 | 1.223 | 1.27 | 1.348 | 0.988 | 2.217 | 0.858 | 1.693 | 0.832 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16684
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.718
|
0.463
|
0.000
|
— |
0.160
|
0.072
|
0.025
|
0.184
|
0.188
|
0.164
|
0.110
|
0.009
|
0.216
|
0.897
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013011
|
1.000
|
1.000
|
Hsc_gene_18429.t1
|
Hsc_gene_18429.t1
|
— |
Q09244.1 Uncharacterized protein C28H8.5 [Caenorhabditis elegans]
|
KAF7636061.1 DUF1794 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.869|GO:0005622_0.755|GO:0005737_0.727|GO:0008150_0.652|GO:0005829_0.586|GO:0009987_0.581|GO:0003674_0.578|GO:0016020_0.530
|
IPR012674+142-317_144-291+|IPR014878+148-290_148-315+|IPR045165+70-292+
|
— |
PF08768+148-290+THAP4-like,_heme-binding_beta-barrel_domain
|
— |
PTHR15854+70-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-89
|
2.000
|
1-36;90-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
36247.150
|
7.245
|
5.000
|
24.214
|
13.208
|
51.258
|
48.742
|
13.836
|
10.377
|
53.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
147.299
|
33.736
|
17.586
|
7.778
|
90.657
|
491.749
|
48.080
|
418.142
|
44.279
|
195.827
|
130.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.170
|
-2.252
|
-1.066
|
3.507
|
2.455
|
-3.346
|
— |
-2.973
|
— | — | — | — | — |