Hg_chrom9_TN10mRNA_17652
Organism: Heterodera glycines Gene Locus: chr9:5199658-5202044 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.966 | 0.425 | 0.806 | 1.126 | 0.733 | 0.897 | 2.078 | 1.154 | 1.158 | 0.826 | 1.375 | 1.587 | 1.249 | 1.113 | 0.631 | 0.681 | 1.417 | 1.199 | 1.07 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16686
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.627
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.164
|
0.351
|
0.025
|
0.212
|
0.850
|
0.236
|
0.190
|
0.016
|
0.205
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013012
|
1.000
|
1.000
|
Hsc_gene_18428.t1
|
Hsc_gene_18428.t1
|
— |
Q8HYR6.1 Dehydrogenase/reductase SDR family member 9 [Bos taurus]
|
KAI1706371.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.829|GO:0008150_0.780|GO:0003824_0.726|GO:0008152_0.612|GO:0005575_0.609|GO:0016491_0.606|GO:0110165_0.605|GO:0044238_0.579|GO:0016614_0.548|GO:0016616_0.548|GO:0009987_0.526|GO:0016020_0.523|GO:0005622_0.519
|
IPR002347+35-52_35-225_112-123_158-174_184-203_205-222+|IPR020904+171-199+|IPR036291+29-317+
|
— |
PF00106+35-225+short_chain_dehydrogenase
|
— |
PTHR43313+13-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
43368.320
|
8.691
|
15.000
|
24.156
|
15.065
|
39.740
|
60.260
|
15.065
|
9.091
|
48.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
588.579
|
1276.451
|
1285.073
|
299.696
|
470.032
|
806.260
|
852.052
|
776.519
|
125.056
|
318.958
|
235.857
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.218
|
-2.228
|
-1.993
|
0.617
|
0.793
|
— | — |
0.277
|
— | — | — | — | — |
No JSON data available for plots.