Hg_chrom9_TN10mRNA_17654
Organism: Heterodera glycines Gene Locus: chr9:5208047-5210363 Feature type: polypeptideProtein Sequence
Length: 307
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 0.758 | 1.066 | 0.786 | 0.706 | 1.42 | 0.814 | 0.814 | 1.086 | 1.717 | 0.494 | 0.766 | 1.991 | 0.877 | 1.595 | 1.07 | 0.801 | 0.592 | 1.754 | 0.671 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16688
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.986
|
1.000
|
1.000
|
1.000
|
0.127
|
0.023
|
0.004
|
0.209
|
0.349
|
0.540
|
0.428
|
0.028
|
0.666
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
XP_024502469.1 TPM domain-containing protein [Strongyloides ratti];CEF63267.1 TPM domain-containing protein [Strongyloides ratti]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005892
|
— |
IPR033438+30-170+
|
— |
PF17175+30-170+Modulator_of_levamisole_receptor-1
|
— |
PTHR33748+22-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
34816.860
|
8.158
|
5.500
|
22.801
|
13.355
|
43.974
|
56.026
|
12.704
|
10.098
|
46.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
2238.181
|
567.780
|
265.790
|
170.649
|
822.310
|
494.599
|
297.143
|
327.148
|
209.296
|
8530.538
|
4964.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.326
|
-1.871
|
-0.530
|
2.237
|
-0.719
|
-0.725
|
-0.703
|
— |
-5.430
|
— |
-2.905
|
— | — |