Hg_chrom9_TN10mRNA_17655
Organism: Heterodera glycines Gene Locus: chr9:5210549-5212920 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.742 | 1.175 | 0.919 | 1.742 | 1.507 | 0.887 | 0.792 | 1.33 | 1.3 | 0.755 | 1.169 | 1.095 | 1.404 | 0.716 | 1.737 | 0.38 | 1.09 | 0.685 | 1.023 | 0.939 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16689
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.634
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKRKFQKVIGTAKKASR
|
— | — | — | — | — | — |
0.043
|
— | — |
0.065
|
0.134
|
0.043
|
0.154
|
0.054
|
0.081
|
0.156
|
0.003
|
0.218
|
0.952
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004973
|
1.000
|
2.000
|
Hsc_gene_18426.t1;Hsc_gene_18426.t2
|
Hsc_gene_18426.t2
|
— |
P91828.2 Zinc metalloproteinase nas-5 [Caenorhabditis elegans]
|
KAI1718012.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.742|GO:0003674_0.615|GO:0005575_0.605|GO:0110165_0.598|GO:0032501_0.558
|
IPR001506+64-278_86-277_103-121_165-183_184-201_223-238_263-276+|IPR006026+78-228+|IPR024079+34-280+|IPR034035+84-275+
|
SM00235+78-228+
|
PF01400+86-277+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+62-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
43519.620
|
8.271
|
13.000
|
32.979
|
12.234
|
50.798
|
49.202
|
18.883
|
14.096
|
45.745
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
769.558
|
9.551
|
188.802
|
170.318
|
118.312
|
119.891
|
98.705
|
140.710
|
3578.382
|
365.670
|
1742.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.082
|
4.025
|
— |
-0.558
|
— | — | — | — |
3.280
|
-4.226
|
— | — | — |
No JSON data available for plots.