Hg_chrom9_TN10mRNA_17661
Organism: Heterodera glycines Gene Locus: chr9:5232710-5237672 Feature type: polypeptideProtein Sequence
Length: 665
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 0.874 | 0.984 | 0.674 | 1.454 | 1.272 | 0.573 | 1.654 | 0.902 | 1.382 | 0.706 | 1.946 | 1.295 | 0.752 | 1.596 | 0.795 | 0.863 | 0.843 | 1.388 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16695
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.932
|
0.004
|
0.236
|
0.049
|
0.050
|
0.073
|
0.005
|
0.054
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013016
|
1.000
|
1.000
|
Hsc_gene_8738.t1
|
Hsc_gene_8737.t1;Hsc_gene_8738.t1
|
— |
Q767M3.1 Valine--tRNA ligase, mitochondrial [Sus scrofa]
|
KAI1722800.1 tRNA synthetases class I (I, l, M and v) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004832|GO:0005524|GO:0006418|GO:0006438
|
GO:0005575_0.793|GO:0110165_0.781|GO:0005622_0.686|GO:0008150_0.664|GO:0005737_0.617|GO:0016020_0.549|GO:0003674_0.544
|
IPR001412+68-79+|IPR002300+50-457+|IPR002303+213-621+|IPR009080+473-608+|IPR013155+525-608+|IPR014729+50-386+
|
— |
PF00133+50-457+tRNA_synthetases_class_I_(I,_L,_M_and_V)|PF08264+525-608+Anticodon-binding_domain_of_tRNA_ligase
|
— |
PTHR11946+213-621+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
623-665
|
1.000
|
1-622
|
1iyw_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.573
|
76242.880
|
6.507
|
0.000
|
29.925
|
11.429
|
49.474
|
50.526
|
15.789
|
14.135
|
44.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2303.431
|
2432.780
|
1869.271
|
2252.820
|
2286.716
|
1716.008
|
2505.501
|
1044.206
|
2493.390
|
2917.230
|
2735.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.610
|
-0.248
|
0.378
|
— |
-0.400
|
0.557
|
-0.823
|
1.406
|
— | — | — | — | — |
No JSON data available for plots.