Hg_chrom9_TN10mRNA_17663
Organism: Heterodera glycines Gene Locus: chr9:5251737-5253914 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 0.786 | 0.922 | 0.486 | 1.972 | 1.011 | 0.537 | 0.845 | 1.002 | 1.066 | 1.28 | 2.154 | 0.861 | 0.596 | 2.3 | 1.127 | 1.016 | 0.469 | 0.65 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16697
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR,RRQSVSDIRLLKMGKNKKP,RRMRKIAVKEERRERRKEKKANKETFRAERLKLEAQR
|
15-37
|
0.890
|
58-85
|
0.981
|
— | — |
0.000
|
— | — |
0.739
|
0.190
|
0.069
|
0.462
|
0.130
|
0.021
|
0.067
|
0.008
|
0.035
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013017
|
1.000
|
1.000
|
Hsc_gene_8721.t1
|
— | — |
Q7KN79.1 Protein LTV1 homolog [Drosophila melanogaster]
|
KAI3415778.1 Protein ltv1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042274
|
GO:0005575_0.760|GO:0110165_0.754|GO:0005622_0.726|GO:0008150_0.717|GO:0009987_0.673|GO:0008152_0.583|GO:0043170_0.583|GO:0009058_0.573|GO:0009059_0.573|GO:0044237_0.573|GO:0044249_0.573|GO:0010467_0.568|GO:0044238_0.568|GO:0071840_0.565|GO:0006139_0.564|GO:0090304_0.550|GO:0034654_0.548|GO:0141187_0.536|GO:0016070_0.533|GO:0032774_0.532
|
IPR007307+125-346_130-243+
|
— |
PF04180+130-243+Low_temperature_viability_protein
|
— |
PTHR21531+125-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-355
|
1.000
|
1-142
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
41501.040
|
9.673
|
13.000
|
38.310
|
7.887
|
59.718
|
40.282
|
21.408
|
16.901
|
40.563
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1679.582
|
3490.311
|
2568.429
|
1721.592
|
1286.946
|
1162.131
|
1052.426
|
1149.830
|
3328.774
|
189.717
|
1535.027
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.673
|
-1.157
|
-0.468
|
-0.452
|
— | — | — | — |
4.000
|
— |
2.884
|
4.760
|
— |
No JSON data available for plots.