Hg_chrom9_TN10mRNA_17665
Organism: Heterodera glycines Gene Locus: chr9:5254202-5257073 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.459 | 0.918 | 0.877 | 0.605 | 1.023 | 0.787 | 0.731 | 1.974 | 1.267 | 1.126 | 0.399 | 2.838 | 1.706 | 0.843 | 1.432 | 1.378 | 1.079 | 1.063 | 1.35 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16698
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — |
15-58
|
0.985
|
11-37
|
0.990
|
— | — |
0.000
|
— | — |
0.090
|
0.104
|
0.041
|
0.196
|
0.610
|
0.410
|
0.321
|
0.015
|
0.086
|
0.641
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002563
|
3.000
|
1.000
|
Hsc_gene_8722.t1
|
Hsc_gene_8722.t1
|
— |
Q09244.1 Uncharacterized protein C28H8.5 [Caenorhabditis elegans]
|
KAH7729783.1 Protein C15F1.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.866|GO:0110165_0.866|GO:0005622_0.748|GO:0005737_0.746|GO:0005829_0.586
|
IPR012674+65-228_67-227+|IPR014878+71-226_74-227+|IPR045165+50-227+
|
— |
PF08768+71-226+THAP4-like,_heme-binding_beta-barrel_domain
|
— |
PTHR15854+50-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
26043.770
|
6.762
|
1.500
|
24.561
|
14.035
|
47.807
|
52.193
|
13.596
|
10.965
|
48.246
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
2839.349
|
322.273
|
174.173
|
1100.262
|
1704.967
|
5344.959
|
1225.411
|
1280.111
|
851.337
|
7601.593
|
4708.626
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.117
|
1.635
|
2.768
|
0.600
|
1.664
|
-2.116
|
-2.178
|
— |
-3.255
|
— | — | — | — |
No JSON data available for plots.