Hg_chrom9_TN10mRNA_17666
Organism: Heterodera glycines Gene Locus: chr9:5254202-5257073 Feature type: polypeptideProtein Sequence
Length: 328
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 0.993 | 0.998 | 1.156 | 0.762 | 0.86 | 0.798 | 1.372 | 1.491 | 0.989 | 0.785 | 2.152 | 1.694 | 0.762 | 1.618 | 1.089 | 1.0 | 0.878 | 1.173 | 0.538 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16698
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKRAKLVEKGKRSDR,KKVAQEFCAAPPKTKQKGR,KQKGRDTSISGRKRAKLVEKGKR
|
63-84
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.139
|
0.127
|
0.035
|
0.216
|
0.504
|
0.292
|
0.224
|
0.017
|
0.101
|
0.504
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002563
|
3.000
|
1.000
|
Hsc_gene_8722.t1
|
— | — |
Q09244.1 Uncharacterized protein C28H8.5 [Caenorhabditis elegans]
|
KAH7729783.1 Protein C15F1.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.883|GO:0110165_0.883|GO:0005622_0.773|GO:0005737_0.707|GO:0005829_0.573
|
IPR012674+165-328_167-327+|IPR014878+171-326_174-327+|IPR045165+150-327+
|
— |
PF08768+171-326+THAP4-like,_heme-binding_beta-barrel_domain
|
— |
PTHR15854+150-327+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
37225.890
|
8.998
|
14.500
|
25.915
|
12.195
|
47.256
|
52.744
|
15.854
|
10.061
|
49.085
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
2839.349
|
322.273
|
174.173
|
1100.262
|
1704.967
|
5344.959
|
1225.411
|
1280.111
|
851.337
|
7601.593
|
4708.626
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.117
|
1.635
|
2.768
|
0.600
|
1.664
|
-2.116
|
-2.178
|
— |
-3.255
|
— | — | — | — |
No JSON data available for plots.