Hg_chrom9_TN10mRNA_17672
Organism: Heterodera glycines Gene Locus: chr9:5267683-5268180 Feature type: polypeptideProtein Sequence
Length: 61
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.572 | 0.762 | 0.894 | 1.696 | 1.913 | 2.522 | 0.585 | 1.639 | 0.364 | 1.329 | 1.242 | 1.929 | 0.455 | 0.315 | 1.673 | 0.468 | 0.537 | 1.242 | 0.0 | 0.964 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16703
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.426
|
0.277
|
0.018
|
0.398
|
0.369
|
0.549
|
0.539
|
0.063
|
0.590
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q4VT26.1 Guanine nucleotide-binding protein subunit gamma [Caenorhabditis briggsae]
|
KAI6173737.1 Guanine nucleotide-binding protein subunit gamma [Aphelenchoides besseyi];KAI6209186.1 Guanine nucleotide-binding protein subunit gamma [Aphelenchoides besseyi]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005834|GO:0007186|GO:0031681
|
GO:0005575_0.822|GO:0110165_0.822|GO:0008150_0.634|GO:0016020_0.554
|
IPR001770+2-60_4-19_20-34+|IPR015898+1-56_1-61_4-59+|IPR036284+1-61_2-59+
|
SM00224+1-61+|SM01224+2-61+
|
PF00631+4-59+GGL_domain
|
G3DSA:4.10.260.10:FF:000001+1-61+Guanine_nucleotide-binding_protein_subunit_gamma
|
PTHR13809+2-60+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-61
|
9ast_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.639
|
7151.160
|
7.105
|
1.000
|
36.066
|
8.197
|
55.738
|
44.262
|
19.672
|
16.393
|
39.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
189.599
|
160.259
|
294.764
|
228.837
|
117.100
|
91.127
|
114.062
|
823.076
|
56.321
|
101.295
|
82.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
0.377
|
-0.256
|
-1.001
|
-0.346
|
0.333
|
3.063
|
-2.707
|
— | — | — | — |
6.912
|
No JSON data available for plots.