Hg_chrom9_TN10mRNA_17673
Organism: Heterodera glycines Gene Locus: chr9:5269392-5286110 Feature type: polypeptideProtein Sequence
Length: 2,306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.286 | 0.988 | 0.852 | 0.882 | 0.875 | 1.712 | 0.547 | 1.496 | 0.761 | 1.289 | 0.44 | 1.25 | 0.928 | 1.101 | 1.283 | 1.375 | 1.137 | 0.874 | 0.734 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16704
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KRSR,RKCSSVLGSARAVPRRRRP,RRKAAELESYQMTHVRRRH,RKAAELESYQMTHVRRRHA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.220
|
0.216
|
0.024
|
0.660
|
0.271
|
0.445
|
0.436
|
0.018
|
0.424
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013020
|
1.000
|
1.000
|
Hsc_gene_8728.t1
|
Hsc_gene_8728.t1
|
— |
Q86X10.1 Ral GTPase-activating protein subunit beta [Homo sapiens]
|
KAI1728461.1 ral GTPase-activating protein subunit beta [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096
|
GO:0003674_0.856|GO:0005488_0.825|GO:0005515_0.793|GO:0008150_0.736|GO:0065007_0.668|GO:0005575_0.563|GO:0110165_0.553
|
IPR039930+26-1489+|IPR046859+163-287+
|
— |
PF20412+163-287+RALGAPB_N-terminal_domain
|
— |
PTHR21344+26-1489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;568-620;1125-1201;1368-2129
|
4.000
|
15-567;621-1124;1202-1367;2130-2306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
252040.120
|
6.935
|
17.500
|
22.116
|
8.586
|
49.610
|
50.390
|
12.186
|
9.931
|
55.204
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
5111.561
|
8219.319
|
5253.442
|
3023.837
|
3818.613
|
5138.083
|
3718.235
|
4195.537
|
9050.654
|
3062.441
|
5628.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.874
|
-1.580
|
-0.689
|
0.305
|
0.442
|
-0.457
|
— | — | — | — | — | — |
-2.998
|
No JSON data available for plots.