Hg_chrom9_TN10mRNA_17674
Organism: Heterodera glycines Gene Locus: chr9:5286402-5287380 Feature type: polypeptideProtein Sequence
Length: 277
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 2.183 | 1.05 | 1.369 | 1.023 | 1.018 | 0.473 | 1.083 | 0.802 | 0.732 | 1.203 | 1.911 | 1.404 | 0.903 | 1.326 | 1.392 | 0.71 | 0.656 | 1.389 | 0.212 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,KRQETKLRQMESEKRKRLM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.959
|
0.089
|
0.035
|
0.286
|
0.017
|
0.025
|
0.026
|
0.024
|
0.043
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013021
|
1.000
|
1.000
|
Hsc_gene_8729.t1
|
Hsc_gene_8729.t1
|
— | — |
KAF7635997.1 HTH CENPB-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.908|GO:0110165_0.903|GO:0005622_0.866|GO:0043226_0.828|GO:0043229_0.816|GO:0016020_0.812|GO:0043227_0.776|GO:0043231_0.750|GO:0005634_0.727|GO:0003674_0.501
|
IPR006600+173-245_179-245_183-244+|IPR009057+115-167_178-240+|IPR018586+118-164+|IPR050863+113-254+
|
SM00674+179-245+
|
PF03221+183-244+Tc5_transposase_DNA-binding_domain|PF09607+118-164+Brinker_DNA-binding_domain
|
— |
PTHR19303+113-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;79-122
|
2.000
|
2-78;123-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.933
|
31412.350
|
8.570
|
10.000
|
28.520
|
9.747
|
55.957
|
44.043
|
16.606
|
11.913
|
53.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightgreen
|
378.572
|
296.935
|
364.480
|
338.856
|
342.997
|
303.737
|
402.937
|
379.867
|
389.487
|
452.960
|
425.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.418
|
— |
0.228
|
— | — | — | — | — |
No JSON data available for plots.