Hg_chrom9_TN10mRNA_17677
Organism: Heterodera glycines Gene Locus: chr9:5289433-5297912 Feature type: polypeptideProtein Sequence
Length: 930
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.15 | 1.056 | 0.445 | 1.201 | 1.158 | 0.576 | 2.043 | 1.004 | 1.337 | 0.717 | 1.708 | 1.105 | 1.22 | 1.382 | 1.137 | 0.74 | 0.766 | 0.662 | 1.107 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16708
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.348
|
0.143
|
0.010
|
0.590
|
0.149
|
0.231
|
0.190
|
0.026
|
0.137
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002564
|
3.000
|
1.000
|
Hsc_gene_8732.t1
|
Hsc_gene_8732.t1
|
— |
Q01433.3 AMP deaminase 2 [Homo sapiens]
|
KAI1723454.1 adenosine/AMP deaminase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003876|GO:0009168|GO:0019239|GO:0032264
|
GO:0008150_0.835|GO:0003674_0.807|GO:0009987_0.681|GO:0005575_0.671|GO:0110165_0.671|GO:0005622_0.618|GO:0003824_0.590|GO:0008152_0.580|GO:0044238_0.566|GO:0044237_0.561|GO:0016787_0.557|GO:0003876_0.522|GO:0016810_0.522|GO:0016814_0.522|GO:0019239_0.522|GO:0047623_0.522|GO:0006139_0.520|GO:0005737_0.507
|
IPR006329+217-926_288-922_305-924_425-921+|IPR006650+830-836+|IPR032466+286-922+
|
— |
PF19326+288-922+AMP_deaminase
|
G3DSA:3.20.20.140:FF:000035+545-920+Probable_amp_deaminase|G3DSA:4.10.800.20:FF:000001+495-585+AMP_deaminase
|
PTHR11359+217-926+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-269
|
1.000
|
270-930
|
2a3l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
106421.330
|
6.728
|
5.000
|
28.602
|
12.688
|
50.538
|
49.462
|
15.591
|
13.011
|
46.774
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.