Hg_chrom9_TN10mRNA_17678
Organism: Heterodera glycines Gene Locus: chr9:5300822-5303508 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.179 | 0.295 | 0.979 | 0.811 | 0.988 | 0.797 | 0.304 | 1.352 | 2.138 | 0.492 | 1.193 | 2.535 | 0.624 | 0.994 | 1.13 | 0.665 | 0.983 | 0.78 | 0.955 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16709
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
9-43
|
0.905
|
— | — | — | — |
0.001
|
— | — |
0.091
|
0.111
|
0.023
|
0.106
|
0.237
|
0.315
|
0.294
|
0.048
|
0.745
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013023
|
1.000
|
1.000
|
Hsc_gene_8733.t1
|
Hsc_gene_8733.t1
|
— |
P46896.1 Solute carrier family 2, facilitated glucose transporter member 1 [Gallus gallus]
|
KAI1711022.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0005575_0.893|GO:0110165_0.893|GO:0008150_0.884|GO:0016020_0.837|GO:0005886_0.811|GO:0071944_0.811|GO:0009987_0.779|GO:0006810_0.744|GO:0051179_0.744|GO:0051234_0.744|GO:0003674_0.714|GO:0055085_0.667|GO:0005215_0.612|GO:0022857_0.612|GO:0005622_0.560|GO:0008643_0.537|GO:0034219_0.536|GO:0043226_0.525|GO:0008645_0.515|GO:0015749_0.515|GO:0043229_0.508
|
IPR005828+17-465+|IPR020846+13-456+|IPR036259+8-470_13-463+|IPR045263+14-482+
|
— |
PF00083+17-465+Sugar_(and_other)_transporter
|
— |
PTHR23503+14-482+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
55263.010
|
8.462
|
9.500
|
15.213
|
13.996
|
36.105
|
63.895
|
8.722
|
6.491
|
45.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
255.686
|
16.290
|
40.929
|
186.102
|
586.632
|
725.751
|
257.676
|
110.623
|
21.800
|
380.775
|
226.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.097
|
3.377
|
2.296
|
1.624
|
0.321
|
-1.485
|
-2.828
|
1.364
|
-4.288
|
3.290
|
— | — | — |
No JSON data available for plots.