Hg_chrom9_TN10mRNA_17679
Organism: Heterodera glycines Gene Locus: chr9:5304615-5307110 Feature type: polypeptideProtein Sequence
Length: 478
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.949 | 0.681 | 0.761 | 0.289 | 1.185 | 0.483 | 1.22 | 2.51 | 0.79 | 0.876 | 1.426 | 0.984 | 0.639 | 0.644 | 2.348 | 0.837 | 0.823 | 0.475 | 1.931 | 1.415 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16710
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.911
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KKKK,KKRK,RKKK,RKKGSKNIRRRRIKRG,RRTIRGIRRPATLKKHRQK,KKHRQKAKNGKVSRKKGSK,RKRGGRKSRRGRWRRKKNL,KHSEWRHRPPKAPKAEGRAWTGKFKSRRRAASRKSVHLSRKRGGRKSRRGRWRRKK
|
— | — | — | — |
1-30
|
— |
0.577
|
— |
1.000
|
0.478
|
0.085
|
0.019
|
0.335
|
0.397
|
0.138
|
0.238
|
0.016
|
0.362
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013024
|
1.000
|
1.000
|
Hsc_gene_8734.t1
|
Hsc_gene_8734.t1
|
— | — | — |
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-386
|
2.000
|
1-102;387-478
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.551
|
55083.360
|
10.752
|
58.000
|
37.238
|
14.644
|
52.929
|
47.071
|
25.941
|
11.297
|
43.724
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
283.837
|
142.307
|
46.584
|
265.505
|
141.838
|
75.823
|
45.245
|
52.679
|
367.366
|
677.519
|
544.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.842
|
0.763
|
2.621
|
-0.937
|
-0.888
|
-0.732
|
— | — | — | — | — | — | — |