Hg_chrom9_TN10mRNA_17681
Organism: Heterodera glycines Gene Locus: chr9:5313348-5315180 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.288 | 1.231 | 0.531 | 1.59 | 2.13 | 0.733 | 0.923 | 0.479 | 1.164 | 0.886 | 0.724 | 1.624 | 0.947 | 1.381 | 1.143 | 0.706 | 0.653 | 1.183 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16712
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.244
|
0.024
|
0.633
|
0.172
|
0.064
|
0.138
|
0.046
|
0.099
|
0.306
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013026
|
1.000
|
1.000
|
Hsc_gene_8736.t1
|
Hsc_gene_8730.t1;Hsc_gene_8735.t1;Hsc_gene_8736.t1
|
— |
Q66T82.1 Microtubule-associated protein RP/EB family member 1 [Coturnix japonica]
|
KAI1703923.1 calponin homology (CH) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008017
|
GO:0005575_0.864|GO:0110165_0.860|GO:0005622_0.828|GO:0008150_0.824|GO:0003674_0.785|GO:0005488_0.764|GO:0009987_0.743|GO:0043226_0.735|GO:0005515_0.727|GO:0043229_0.720|GO:0005737_0.690|GO:0043228_0.580|GO:0043232_0.580|GO:0071840_0.568|GO:0016043_0.560|GO:0008092_0.539|GO:0008017_0.536|GO:0015631_0.536|GO:0065007_0.519
|
IPR027328+179-261+|IPR036872+172-254_175-252+
|
— | — | — |
PTHR10623+179-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83;301-325
|
1.000
|
84-300
|
2r8u_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
37183.080
|
4.911
|
-9.000
|
30.769
|
10.462
|
56.923
|
43.077
|
14.462
|
16.308
|
47.077
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
180.358
|
73.794
|
56.602
|
185.641
|
254.946
|
167.625
|
342.972
|
101.463
|
74.137
|
289.823
|
197.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.616
|
1.194
|
1.826
|
0.427
|
-0.591
|
1.045
|
-0.839
|
1.905
|
— | — | — | — | — |
No JSON data available for plots.