Hg_chrom9_TN10mRNA_17682
Organism: Heterodera glycines Gene Locus: chr9:5315562-5320525 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.139 | 1.231 | 0.745 | 0.913 | 1.293 | 0.669 | 1.801 | 0.736 | 1.46 | 0.633 | 1.78 | 1.321 | 1.025 | 1.706 | 1.091 | 0.756 | 0.677 | 0.665 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16713
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.165
|
0.009
|
0.515
|
0.138
|
0.069
|
0.148
|
0.039
|
0.077
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002564
|
3.000
|
1.000
|
Hsc_gene_8732.t1
|
Hsc_gene_8730.t1
|
— |
Q9DBT5.2 AMP deaminase 2 [Mus musculus]
|
KAH7710450.1 adenosine monophosphate deaminase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003876|GO:0009168|GO:0019239|GO:0032264
|
GO:0008150_0.822|GO:0003674_0.812|GO:0009987_0.657|GO:0005575_0.646|GO:0110165_0.643|GO:0003824_0.608|GO:0008152_0.583|GO:0005622_0.575|GO:0044238_0.563|GO:0016787_0.559|GO:0044237_0.559|GO:0003876_0.518|GO:0016810_0.518|GO:0016814_0.518|GO:0019239_0.518|GO:0047623_0.518
|
IPR006329+309-383_384-686_384-690+|IPR006650+594-600+|IPR032466+293-686+
|
— |
PF19326+309-383_384-686+AMP_deaminase
|
— |
PTHR11359+384-690+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-216
|
1.000
|
217-694
|
8hub_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
79053.560
|
7.792
|
14.500
|
28.386
|
11.671
|
50.576
|
49.424
|
16.138
|
12.248
|
48.127
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
205.047
|
101.315
|
79.259
|
107.501
|
107.472
|
101.104
|
234.564
|
169.785
|
169.455
|
432.115
|
319.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.588
|
— |
0.552
|
— | — |
1.225
|
0.642
|
0.609
|
— | — | — | — | — |
No JSON data available for plots.