Hg_chrom9_TN10mRNA_17689
Organism: Heterodera glycines Gene Locus: chr9:5333350-5337900 Feature type: polypeptideProtein Sequence
Length: 682
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 1.296 | 1.306 | 0.354 | 1.295 | 0.902 | 0.419 | 1.613 | 0.749 | 1.565 | 0.978 | 1.898 | 1.263 | 0.902 | 1.347 | 0.775 | 0.793 | 0.8 | 1.015 | 1.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16719
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.359
|
0.155
|
0.011
|
0.622
|
0.091
|
0.161
|
0.131
|
0.005
|
0.162
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002564
|
3.000
|
1.000
|
Hsc_gene_8732.t1
|
— | — |
Q01433.3 AMP deaminase 2 [Homo sapiens]
|
KAH7710450.1 adenosine monophosphate deaminase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003876|GO:0009168|GO:0019239|GO:0032264
|
GO:0008150_0.816|GO:0003674_0.794|GO:0005575_0.651|GO:0110165_0.651|GO:0009987_0.644|GO:0003824_0.643|GO:0005622_0.601|GO:0008152_0.582|GO:0016787_0.568|GO:0044238_0.559|GO:0044237_0.545|GO:0005737_0.529|GO:0003876_0.520|GO:0016810_0.520|GO:0016814_0.520|GO:0019239_0.520|GO:0047623_0.520
|
IPR006329+1-682_12-679_45-676_62-677+|IPR006650+584-590+|IPR032466+43-675+
|
— |
PF19326+45-676+AMP_deaminase
|
G3DSA:3.20.20.140:FF:000035+308-674+Probable_amp_deaminase|G3DSA:4.10.800.20:FF:000001+250-339+AMP_deaminase
|
PTHR11359+12-679+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-682
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
79520.390
|
6.367
|
-2.000
|
31.232
|
13.343
|
50.587
|
49.413
|
16.276
|
14.956
|
44.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
414.922
|
237.462
|
381.277
|
526.590
|
914.287
|
564.881
|
1344.638
|
299.297
|
150.093
|
102.051
|
122.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.451
|
1.012
|
0.577
|
0.764
|
-0.681
|
1.263
|
-1.028
|
2.313
|
— | — |
3.629
|
— | — |
No JSON data available for plots.