Hg_chrom9_TN10mRNA_17691
Organism: Heterodera glycines Gene Locus: chr9:5340557-5343067 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 0.691 | 1.544 | 0.22 | 2.123 | 0.762 | 0.834 | 0.955 | 0.944 | 0.975 | 1.126 | 1.624 | 0.885 | 0.735 | 1.993 | 1.001 | 0.835 | 0.643 | 0.163 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16721
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRSR,RRMRKIAVKEERRERRKEKKTNKETFRAERLKLE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.720
|
0.073
|
0.016
|
0.503
|
0.069
|
0.074
|
0.141
|
0.004
|
0.075
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013027
|
1.000
|
1.000
|
Hsc_gene_8720.t1
|
Hsc_gene_8720.t1
|
— |
Q6NSQ7.2 Protein LTV1 homolog [Mus musculus]
|
KAI3415778.1 Protein ltv1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042274
|
GO:0005575_0.764|GO:0110165_0.759|GO:0005622_0.727|GO:0008150_0.663|GO:0009987_0.615|GO:0008152_0.535|GO:0044238_0.532|GO:0043170_0.522|GO:0009058_0.518|GO:0044237_0.518|GO:0043226_0.507|GO:0006139_0.506|GO:0009059_0.503|GO:0010467_0.503|GO:0044249_0.503
|
IPR007307+1-462_10-206_199-359+
|
— |
PF04180+10-206_199-359+Low_temperature_viability_protein
|
— |
PTHR21531+1-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
129-471
|
1.000
|
1-128
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
53790.760
|
4.972
|
-14.500
|
40.340
|
7.431
|
58.386
|
41.614
|
19.108
|
21.231
|
45.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
1998.120
|
2325.260
|
1559.157
|
2019.070
|
2036.830
|
1776.342
|
1813.383
|
1196.190
|
3422.737
|
1402.384
|
2268.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.807
|
-0.341
|
0.483
|
— |
-0.183
|
— |
-0.676
|
0.745
|
— | — | — | — | — |
No JSON data available for plots.