Hg_chrom9_TN10mRNA_17692
Organism: Heterodera glycines Gene Locus: chr9:5343748-5350597 Feature type: polypeptideProtein Sequence
Length: 1,159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 1.224 | 1.082 | 0.446 | 1.237 | 1.372 | 0.657 | 1.337 | 0.671 | 0.921 | 0.562 | 1.421 | 1.246 | 0.929 | 1.796 | 1.553 | 1.004 | 0.654 | 0.929 | 0.457 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16722
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.575
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,PKIKRKH,KIKRKHLKKR
|
43-64
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.894
|
0.070
|
0.010
|
0.398
|
0.028
|
0.019
|
0.026
|
0.052
|
0.032
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004980
|
1.000
|
2.000
|
Hsc_gene_8719.t1;Hsc_gene_8719.t2
|
Hsc_gene_8719.t1;Hsc_gene_8719.t2
|
— | — | — |
MBO5647889
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.920|GO:0110165_0.915|GO:0003674_0.861|GO:0005622_0.857|GO:0016020_0.827|GO:0005488_0.825|GO:0043226_0.795|GO:0043229_0.792|GO:0043227_0.738|GO:0097159_0.735|GO:0003676_0.716|GO:0043231_0.716|GO:0005634_0.692|GO:0003677_0.675|GO:0003723_0.675|GO:0000217_0.650|GO:0000405_0.650|GO:0003697_0.650
|
IPR004343+524-635_524-658_529-632+|IPR036128+94-224_112-224_325-458_331-458_525-655_526-653+
|
SM00719+524-635+
|
PF03126+529-632+Plus-3_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;233-339;457-544;650-1159
|
3.000
|
28-232;340-456;545-649
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
130070.910
|
6.808
|
5.500
|
28.559
|
9.922
|
56.169
|
43.831
|
15.186
|
13.374
|
52.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
orange
|
1379.883
|
2592.752
|
1608.012
|
1398.257
|
1331.728
|
1419.624
|
2556.510
|
1085.328
|
1332.416
|
540.596
|
879.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.918
|
-1.028
|
— | — | — |
0.859
|
-0.494
|
1.379
|
— | — | — | — | — |
No JSON data available for plots.