Hg_chrom9_TN10mRNA_17695
Organism: Heterodera glycines Gene Locus: chr9:5353246-5355885 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.593 | 0.67 | 1.25 | 1.07 | 1.22 | 1.251 | 0.528 | 1.885 | 1.38 | 1.079 | 0.806 | 1.696 | 1.601 | 1.066 | 2.036 | 0.697 | 0.582 | 0.907 | 0.512 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16725
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRQYRLTNRSRDGRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.917
|
0.170
|
0.036
|
0.300
|
0.027
|
0.019
|
0.013
|
0.026
|
0.085
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004977
|
2.000
|
1.000
|
Hsc_gene_8716.t1
|
Hsc_gene_8697.t1;Hsc_gene_8697.t2;Hsc_gene_8716.t1
|
— |
Q9KHE2.1 Macro domain-containing protein in non 5'region [Streptomyces griseus]
|
KAI1708304.1 macro domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.613|GO:0005575_0.610|GO:0110165_0.603|GO:0005622_0.553|GO:0016020_0.538|GO:0043226_0.509
|
IPR002589+44-126+|IPR043472+2-181_12-171+
|
— |
PF01661+44-126+Macro_domain
|
— |
PTHR11106+9-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
418-451
|
1.000
|
1-417
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.614
|
52896.730
|
8.154
|
13.500
|
33.259
|
13.082
|
49.446
|
50.554
|
19.069
|
14.191
|
42.350
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
842.518
|
1237.370
|
910.523
|
1075.488
|
1304.867
|
1134.243
|
1521.258
|
1013.635
|
522.059
|
220.454
|
349.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.672
|
-0.339
|
0.349
|
0.247
|
-0.187
|
0.434
|
-0.267
|
0.728
|
— | — | — | — | — |
No JSON data available for plots.