Hg_chrom9_TN10mRNA_17699
Organism: Heterodera glycines Gene Locus: chr9:5362094-5363240 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.948 | 1.397 | 1.483 | 0.148 | 1.502 | 1.211 | 0.664 | 1.502 | 1.144 | 1.334 | 0.65 | 3.282 | 0.596 | 0.99 | 0.701 | 1.042 | 0.633 | 0.455 | 1.651 | 0.884 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16729
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.845
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.738
|
0.175
|
0.019
|
0.653
|
0.074
|
0.111
|
0.124
|
0.013
|
0.114
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004981
|
1.000
|
2.000
|
Hsc_gene_8712.t1;Hsc_gene_8712.t2
|
Hsc_gene_8712.t1;Hsc_gene_8712.t2
|
— |
Q8WVL7.1 Ankyrin repeat domain-containing protein 49 [Homo sapiens]
|
KAI6205816.1 ANK-REP-REGION domain-containing protein [Aphelenchoides besseyi];KAI6226976.1 ANK-REP-REGION domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.935|GO:0005575_0.895|GO:0110165_0.885|GO:0005622_0.833|GO:0065007_0.828|GO:0050789_0.813|GO:0009987_0.550|GO:0016020_0.542|GO:0043226_0.513|GO:0005737_0.501
|
IPR002110+69-98_76-166_103-132_103-135_136-165_136-168_169-205+|IPR036770+50-233_74-219+|IPR051637+57-221+
|
SM00248+69-98_103-132_136-165_169-205+
|
PF12796+76-166+Ankyrin_repeats_(3_copies)
|
— |
PTHR24180+57-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-74
|
1.000
|
75-233
|
4gmr_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
26334.420
|
4.237
|
-18.500
|
27.897
|
10.300
|
49.785
|
50.215
|
10.730
|
17.167
|
47.639
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkturquoise
|
1028.397
|
1059.323
|
1253.597
|
1306.341
|
1159.513
|
751.364
|
807.942
|
966.074
|
885.217
|
1096.264
|
1005.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.165
|
0.168
|
-0.204
|
-0.611
|
— |
0.256
|
— | — | — | — | — | — |
No JSON data available for plots.