Hg_chrom9_TN10mRNA_17700
Organism: Heterodera glycines Gene Locus: chr9:5363322-5365514 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.214 | 0.668 | 0.807 | 0.18 | 1.654 | 1.205 | 0.964 | 0.653 | 0.638 | 1.023 | 0.989 | 1.229 | 1.015 | 1.155 | 1.439 | 1.567 | 0.685 | 0.791 | 0.201 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16730
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,KKAPPARRKAEPSEGEEEVKRKKAKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.920
|
0.055
|
0.047
|
0.196
|
0.016
|
0.017
|
0.084
|
0.005
|
0.013
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013030
|
1.000
|
1.000
|
Hsc_gene_8711.t1
|
Hsc_gene_8711.t1
|
— | — |
KAI1729887.1 sin-like protein conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
-0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006351
|
— |
IPR006886+236-360+
|
— |
PF04801+236-360+RPC5_protein
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-230;380-383
|
1.000
|
231-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
41497.350
|
6.383
|
-0.500
|
29.243
|
6.527
|
51.958
|
48.042
|
14.883
|
14.360
|
52.742
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1873.705
|
2981.165
|
2170.722
|
1398.852
|
1381.478
|
1351.179
|
2132.334
|
1233.160
|
1929.184
|
2007.237
|
1973.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.687
|
-1.229
|
-0.526
|
— | — |
0.669
|
-0.239
|
0.934
|
— | — | — | — | — |
No JSON data available for plots.