Hg_chrom9_TN10mRNA_17704
Organism: Heterodera glycines Gene Locus: chr9:5371497-5374626 Feature type: polypeptideProtein Sequence
Length: 440
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.11 | 0.661 | 0.705 | 1.402 | 1.399 | 0.595 | 1.136 | 0.909 | 1.505 | 1.309 | 1.337 | 1.199 | 0.699 | 0.881 | 1.071 | 1.006 | 1.033 | 0.524 | 0.668 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16733
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_8705
|
— |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-17
|
0.993
|
1.000
|
0.000
|
0.000
|
0.772
|
0.158
|
0.029
|
0.461
|
0.120
|
0.096
|
0.113
|
0.018
|
0.059
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002566
|
2.000
|
2.000
|
Hsc_gene_8705.t1;Hsc_gene_8705.t2
|
Hsc_gene_8705.t1;Hsc_gene_8705.t2
|
— |
Q9D8Z1.1 Activating signal cointegrator 1 complex subunit 1 [Mus musculus]
|
KAF7639239.1 KH domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0006307
|
GO:0008150_0.948|GO:0005575_0.924|GO:0110165_0.922|GO:0009987_0.890|GO:0065007_0.861|GO:0005622_0.844|GO:0016020_0.839|GO:0050789_0.839|GO:0050794_0.817|GO:0043226_0.788|GO:0043229_0.771|GO:0008152_0.754|GO:0043170_0.750|GO:0044238_0.745|GO:0044237_0.742|GO:0009058_0.735|GO:0043227_0.734|GO:0009059_0.729|GO:0044249_0.729|GO:0019222_0.728|GO:0043231_0.724|GO:0031323_0.722|GO:0010467_0.721|GO:0060255_0.718|GO:0080090_0.714|GO:0006139_0.710|GO:0009889_0.707|GO:0031326_0.707|GO:0010556_0.704|GO:0034654_0.703|GO:0010468_0.701|GO:0090304_0.701|GO:0016070_0.697|GO:0141187_0.696|GO:0032774_0.694|GO:0019219_0.691|GO:0006351_0.689|GO:0051252_0.689|GO:0006355_0.686|GO:2001141_0.686|GO:0032991_0.655|GO:0030054_0.602|GO:0005634_0.601|GO:0031974_0.578|GO:0043233_0.578|GO:0070013_0.578|GO:0045202_0.577|GO:0031981_0.569|GO:1902494_0.566|GO:0005654_0.560|GO:0005667_0.545|GO:0031594_0.540|GO:1990391_0.540
|
IPR004087+139-212+|IPR004088+144-203+|IPR009210+120-434+|IPR019510+220-422+|IPR036612+134-194_142-215+
|
SM00322+139-212+
|
PF00013+144-203+KH_domain|PF10469+220-422+AKAP7_2'5'_RNA_ligase-like_domain
|
— |
PTHR13360+120-434+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
49573.910
|
8.224
|
9.000
|
27.273
|
9.545
|
51.136
|
48.864
|
15.227
|
12.045
|
46.136
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
1452.910
|
675.670
|
1072.094
|
1067.627
|
936.912
|
664.104
|
1139.784
|
723.762
|
3296.980
|
1528.765
|
2286.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.436
|
0.523
|
— |
-0.221
|
-0.482
|
0.790
|
— |
0.798
|
— |
-1.483
|
— | — | — |