Hg_chrom9_TN10mRNA_17705
Organism: Heterodera glycines Gene Locus: chr9:5374536-5377875 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.495 | 0.797 | 0.779 | 0.099 | 2.619 | 1.172 | 0.986 | 1.286 | 0.444 | 0.541 | 0.952 | 1.513 | 0.397 | 1.154 | 1.516 | 1.02 | 0.89 | 0.736 | 0.0 | 0.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.752
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKARDGSKKRKTPKKKAN,NGQKDERSRKVDGKKARDGSKKRKTPKKK
|
19-47
|
0.949
|
— | — | — | — |
0.000
|
— | — |
0.300
|
0.058
|
0.016
|
0.783
|
0.040
|
0.073
|
0.180
|
0.008
|
0.243
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013033
|
1.000
|
1.000
|
Hsc_gene_8704.t1
|
— | — | — |
KAF7639238.1 Doublecortin domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035556
|
GO:0005575_0.936|GO:0110165_0.935|GO:0008150_0.784|GO:0009987_0.747|GO:0016020_0.745|GO:0005622_0.733|GO:0043226_0.680|GO:0071944_0.641|GO:0032501_0.634|GO:0005886_0.627|GO:0005737_0.552|GO:0043229_0.551|GO:0003674_0.511|GO:0065007_0.509|GO:0043228_0.505|GO:0043232_0.505
|
IPR003533+15-100_20-100_38-91+|IPR036572+6-107_7-92+|IPR049626+10-114+
|
SM00537+15-100+
|
PF03607+38-91+Doublecortin
|
— |
PTHR23004+10-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;103-350
|
1.000
|
10-102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
37941.350
|
4.701
|
-17.500
|
36.286
|
4.857
|
56.857
|
43.143
|
16.286
|
20.000
|
52.571
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
334.723
|
628.382
|
718.427
|
405.779
|
162.780
|
172.681
|
119.663
|
376.803
|
138.535
|
391.317
|
282.982
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.768
|
-0.715
|
-1.351
|
— |
-0.519
|
1.024
|
-1.514
|
— | — | — | — | — |
No JSON data available for plots.