Hg_chrom9_TN10mRNA_17712
Organism: Heterodera glycines Gene Locus: chr9:5433297-5435305 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.326 | 0.682 | 0.77 | 0.225 | 0.543 | 0.585 | 1.086 | 0.651 | 1.231 | 1.365 | 0.938 | 0.958 | 2.081 | 0.564 | 1.396 | 1.303 | 0.641 | 0.839 | 1.253 | 1.15 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16741
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.867
|
0.096
|
0.171
|
0.152
|
0.106
|
0.157
|
0.068
|
0.228
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013038
|
1.000
|
1.000
|
Hsc_gene_8691.t1
|
Hsc_gene_8691.t1
|
— |
Q8SQH5.3 ADP/ATP translocase 2 [Bos taurus]
|
EPB76255.1 ADP/ATP translocase 1 [Ancylostoma ceylanicum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005471|GO:0005743|GO:0055085|GO:0140021|GO:1990544
|
GO:0005575_0.849|GO:0110165_0.838|GO:0008150_0.779|GO:0016020_0.755|GO:0005622_0.720|GO:0005737_0.705|GO:0043226_0.701|GO:0009987_0.694|GO:0043229_0.693|GO:0043227_0.673|GO:0043231_0.663|GO:0003674_0.660|GO:0051179_0.566|GO:0006810_0.562|GO:0051234_0.562
|
IPR002067+19-32_32-46_81-101_131-149_179-197_224-246+|IPR002113+14-305_16-28_59-80_92-104_116-129_220-236+|IPR018108+14-106_14-110_116-206_117-207_215-304+|IPR023395+12-305_13-300+
|
— |
PF00153+14-110_117-207_215-304+Mitochondrial_carrier_protein
|
— |
PTHR45635+14-305+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
33857.080
|
10.429
|
19.000
|
21.824
|
14.332
|
40.065
|
59.935
|
14.332
|
7.492
|
49.837
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
777.834
|
848.910
|
509.602
|
624.279
|
714.478
|
758.106
|
1410.797
|
476.891
|
311.582
|
1165.689
|
799.643
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.967
|
-0.581
|
0.402
|
0.163
|
— |
0.906
|
-0.772
|
1.706
|
— | — | — | — | — |
No JSON data available for plots.