Hg_chrom9_TN10mRNA_17714
Organism: Heterodera glycines Gene Locus: chr9:5440955-5445889 Feature type: polypeptideProtein Sequence
Length: 979
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 0.998 | 0.929 | 0.704 | 1.209 | 1.021 | 0.535 | 1.124 | 0.863 | 1.518 | 0.743 | 1.142 | 1.22 | 1.061 | 1.48 | 1.445 | 1.105 | 0.774 | 0.55 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16743
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.333
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRP,RRNQPSQQTAKKRRTM
|
46-66
|
0.971
|
29-62
|
0.994
|
— | — |
0.000
|
— | — |
0.859
|
0.193
|
0.009
|
0.279
|
0.027
|
0.066
|
0.074
|
0.016
|
0.063
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013039
|
1.000
|
1.000
|
Hsc_gene_8688.t1
|
Hsc_gene_8688.t1
|
— |
P51530.3 DNA replication ATP-dependent helicase/nuclease DNA2 [Homo sapiens]
|
KAI3419625.1 Superoxide dismutase [Cu-Zn] [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0009987_0.907|GO:0005575_0.826|GO:0110165_0.821|GO:0008152_0.776|GO:0043170_0.770|GO:0044238_0.764|GO:0005622_0.750|GO:0016020_0.739|GO:0006139_0.730|GO:0090304_0.719|GO:0043226_0.697|GO:0006259_0.681|GO:0050896_0.678|GO:0043229_0.670|GO:0051716_0.657|GO:0043227_0.647|GO:0003674_0.631|GO:0044237_0.631|GO:0009058_0.629|GO:0043231_0.624|GO:0009059_0.615|GO:0044249_0.615|GO:0006950_0.601|GO:0034654_0.589|GO:0141187_0.585|GO:0033554_0.572|GO:0016043_0.557|GO:0071840_0.557|GO:0006974_0.554|GO:0071897_0.549|GO:0006281_0.548|GO:0006260_0.547|GO:0005634_0.539
|
IPR011604+136-338+|IPR014808+26-206+|IPR027417+736-902+|IPR051827+26-341+
|
— |
PF08696+26-206+DNA_replication_factor_Dna2
|
— |
PTHR36531+26-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
377-444;658-710
|
3.000
|
1-376;445-657;711-979
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
109422.120
|
7.243
|
9.000
|
26.762
|
8.887
|
51.890
|
48.110
|
14.402
|
12.360
|
50.664
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightyellow
|
1752.481
|
939.756
|
282.327
|
727.542
|
1070.361
|
1483.775
|
2569.955
|
1020.304
|
116.473
|
4544.493
|
2646.770
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.967
|
-0.506
|
1.476
|
0.525
|
0.486
|
0.803
|
-0.655
|
1.479
|
-5.404
|
2.830
|
-1.775
|
— | — |
No JSON data available for plots.