Hg_chrom9_TN10mRNA_17718
Organism: Heterodera glycines Gene Locus: chr9:5467584-5472430 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.168 | 1.049 | 0.45 | 0.452 | 0.534 | 1.941 | 0.814 | 3.275 | 0.518 | 0.747 | 0.221 | 1.541 | 1.132 | 1.875 | 1.159 | 1.934 | 0.787 | 0.904 | 0.448 | 0.342 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16747
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.916
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
26-46
|
0.922
|
11-42
|
0.963
|
— | — |
0.000
|
— | — |
0.299
|
0.263
|
0.028
|
0.533
|
0.113
|
0.296
|
0.121
|
0.036
|
0.494
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013042
|
1.000
|
1.000
|
Hsc_gene_8684.t1
|
Hsc_gene_8684.t1;Hsc_gene_8684.t2
|
— |
Q9QZK7.1 Docking protein 3 [Mus musculus]
|
KAF7639237.1 IRS-type PTB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.886|GO:0008150_0.775|GO:0005622_0.737|GO:0065007_0.735|GO:0050789_0.729|GO:0009987_0.728|GO:0050794_0.728|GO:0050896_0.638|GO:0051716_0.600|GO:0023052_0.583|GO:0007154_0.582|GO:0007165_0.564
|
IPR002404+17-121_25-116_33-113+|IPR011993+11-143+|IPR050996+26-425+
|
SM00310+25-116+|SM01244+24-116+
|
PF02174+33-113+PTB_domain_(IRS-1_type)
|
— |
PTHR21258+26-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
127-687
|
1.000
|
1-126
|
2yt2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
73722.880
|
9.281
|
32.500
|
19.360
|
12.373
|
49.782
|
50.218
|
13.683
|
5.677
|
59.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1438.066
|
4647.280
|
1427.231
|
1133.779
|
1058.506
|
1262.004
|
625.530
|
2148.859
|
779.811
|
1092.983
|
958.766
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.932
|
-2.172
|
-0.224
|
-0.131
|
0.268
|
-1.004
|
0.667
|
-1.641
|
— | — | — | — | — |
No JSON data available for plots.