Hg_chrom9_TN10mRNA_17719
Organism: Heterodera glycines Gene Locus: chr9:5472597-5473623 Feature type: polypeptideProtein Sequence
Length: 134
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.041 | 0.407 | 1.029 | 0.746 | 1.914 | 1.155 | 2.985 | 0.498 | 0.706 | 1.244 | 0.439 | 1.451 | 0.431 | 2.284 | 0.746 | 1.223 | 0.678 | 1.722 | 0.658 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16748
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — |
13-41
|
0.914
|
— | — | — | — |
0.000
|
— | — |
0.817
|
0.306
|
0.005
|
0.310
|
0.082
|
0.017
|
0.042
|
0.005
|
0.037
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004984
|
2.000
|
1.000
|
Hsc_gene_8683.t1
|
— | — |
Q60554.1 Homeobox protein Nkx-6.1 [Mesocricetus auratus]
|
KAH7697698.1 homeobox protein not2-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.888|GO:0032502_0.721|GO:0048856_0.716|GO:0032501_0.688|GO:0009987_0.684|GO:0005575_0.677|GO:0110165_0.665|GO:0065007_0.645|GO:0050789_0.640|GO:0007275_0.629|GO:0048731_0.614|GO:0005622_0.610|GO:0050794_0.602|GO:0043226_0.563|GO:0048513_0.548|GO:0043229_0.527|GO:0003674_0.525|GO:0005488_0.501
|
IPR000047+70-79_79-95+|IPR001356+51-103_57-99_57-100_58-98+|IPR009057+58-101+|IPR017970+74-97+|IPR050877+58-132+
|
SM00389+51-103+
|
PF00046+58-98+Homeodomain
|
— |
PTHR24339+58-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
90-134
|
1.000
|
1-89
|
4xrs_I
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
15524.560
|
11.291
|
21.000
|
32.090
|
15.672
|
56.716
|
43.284
|
25.373
|
6.716
|
44.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
13.119
|
38.937
|
18.255
|
3.478
|
7.088
|
13.279
|
12.582
|
25.406
|
7.481
|
7.148
|
7.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.324
|
-3.618
|
-2.277
|
— |
0.915
|
— |
0.829
|
-0.871
|
— | — | — | — | — |
No JSON data available for plots.