Hg_chrom9_TN10mRNA_17723
Organism: Heterodera glycines Gene Locus: chr9:5482764-5486300 Feature type: polypeptideProtein Sequence
Length: 800
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.352 | 0.61 | 0.568 | 0.776 | 0.75 | 1.763 | 0.536 | 1.625 | 0.444 | 0.963 | 0.492 | 1.471 | 1.111 | 1.683 | 1.607 | 1.786 | 1.332 | 0.568 | 0.481 | 0.221 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16751
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.741
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRRR,RRLLRAHLLRRKSRT,RRRTIVTVMHQHQQKQIKK
|
— | — |
3-53
|
1.000
|
— | — |
0.000
|
— | — |
0.832
|
0.158
|
0.026
|
0.369
|
0.039
|
0.027
|
0.040
|
0.061
|
0.060
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013043
|
1.000
|
1.000
|
Hsc_gene_8682.t1
|
— | — | — |
KAI1728408.1 early growth response protein 1 [Ditylenchus destructor]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+614-636_614-641_616-636_642-664_642-669_644-664_670-693_670-698+|IPR036236+611-670_661-696+
|
SM00355+614-636_642-664_670-693+
|
PF00096+614-636_644-664_670-693+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000016+636-664+zinc_finger_protein_37_homolog|G3DSA:3.30.160.60:FF:001732+665-691+Zgc:162936
|
PTHR14003+359-716+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
131-336;552-617;661-800
|
3.000
|
1-130;337-551;618-660
|
2i13_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
86801.520
|
10.233
|
41.000
|
22.000
|
8.625
|
52.125
|
47.875
|
14.375
|
7.625
|
57.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
346.373
|
124.911
|
783.118
|
482.176
|
172.457
|
260.827
|
104.685
|
382.473
|
338.449
|
395.052
|
370.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.419
|
1.811
|
-0.592
|
-1.515
|
0.612
|
-1.309
|
0.450
|
-1.729
|
— | — | — | — | — |
No JSON data available for plots.