Hg_chrom9_TN10mRNA_17725
Organism: Heterodera glycines Gene Locus: chr9:5490221-5491603 Feature type: polypeptideProtein Sequence
Length: 162
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.005 | 1.347 | 0.851 | 0.72 | 0.633 | 1.837 | 2.778 | 1.097 | 1.084 | 1.029 | 0.726 | 0.686 | 0.95 | 0.504 | 0.97 | 0.708 | 1.122 | 0.0 | 0.182 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16753
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.363
|
0.559
|
0.047
|
0.727
|
0.235
|
0.160
|
0.058
|
0.185
|
0.269
|
0.506
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013045
|
1.000
|
1.000
|
Hsc_gene_8679.t1
|
Hsc_gene_8679.t1
|
— |
Q27666.1 Superoxide dismutase [Cu-Zn] [Haemonchus contortus]
|
KAF7637737.1 Superoxide dismutase [Cu-Zn] [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005507|GO:0006801|GO:0046872
|
GO:0008150_0.821|GO:0005575_0.747|GO:0110165_0.736|GO:0003674_0.708|GO:0009987_0.708|GO:0050896_0.674|GO:0051716_0.614|GO:0005622_0.612|GO:0006950_0.603|GO:0008152_0.602|GO:0042221_0.597|GO:0016020_0.584|GO:0005737_0.583|GO:0044237_0.577|GO:0070887_0.571|GO:0033554_0.570|GO:0006979_0.562|GO:0034599_0.558|GO:0062197_0.558|GO:0003824_0.519|GO:0043226_0.511|GO:0043229_0.504
|
IPR001424+5-154_19-157_49-71_85-94_104-126_132-158+|IPR018152+49-59_146-157+|IPR024134+4-158+|IPR036423+2-162_9-160+
|
— |
PF00080+19-157+Copper/zinc_superoxide_dismutase_(SODC)
|
G3DSA:2.60.40.200:FF:000001+3-161+Superoxide_dismutase_[Cu-Zn]
|
PTHR10003+4-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-162
|
3kbf_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
16668.680
|
6.576
|
0.500
|
26.543
|
8.642
|
44.444
|
55.556
|
14.815
|
11.728
|
61.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3766.452
|
817.456
|
1422.986
|
3161.521
|
5496.373
|
4361.585
|
2443.619
|
1729.115
|
2644.697
|
7207.457
|
5251.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
1.814
|
1.261
|
0.766
|
-0.319
|
-0.824
|
-1.441
|
0.644
|
-1.549
|
— | — | — | — |
No JSON data available for plots.