Hg_chrom9_TN10mRNA_17728
Organism: Heterodera glycines Gene Locus: chr9:5494788-5497764 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.231 | 0.758 | 0.963 | 0.14 | 1.12 | 1.306 | 1.091 | 0.916 | 1.131 | 1.239 | 0.617 | 1.198 | 0.735 | 0.822 | 1.247 | 0.902 | 1.068 | 1.142 | 0.783 | 0.839 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16756
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.217
|
0.476
|
0.042
|
0.516
|
0.443
|
0.536
|
0.504
|
0.079
|
0.438
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013047
|
1.000
|
1.000
|
Hsc_gene_8677.t1
|
Hsc_gene_8677.t1
|
— | — |
KAI1726835.1 senescence-associated protein [Ditylenchus destructor]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.931|GO:0005575_0.890|GO:0110165_0.881|GO:0009987_0.870|GO:0005622_0.786|GO:0065007_0.777|GO:0032501_0.740|GO:0032502_0.736|GO:0048856_0.736|GO:0043226_0.731|GO:0007275_0.720|GO:0043229_0.712|GO:0065008_0.698|GO:0003674_0.544|GO:0016020_0.524
|
IPR009686+267-446+|IPR045036+116-459+
|
— |
PF06911+267-446+Senescence_domain
|
— |
PTHR21068+116-459+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
473-491
|
1.000
|
1-472
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
53257.200
|
5.694
|
-4.500
|
24.033
|
8.350
|
45.214
|
54.786
|
12.016
|
12.016
|
53.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1377.341
|
2644.673
|
1564.128
|
1417.845
|
1384.910
|
1408.587
|
1985.912
|
1973.072
|
1058.585
|
589.756
|
790.683
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.987
|
-1.036
|
— | — | — |
0.506
|
0.381
|
— | — | — | — | — | — |
No JSON data available for plots.