Hg_chrom9_TN10mRNA_17730
Organism: Heterodera glycines Gene Locus: chr9:5501555-5503209 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.782 | 0.684 | 0.688 | 0.29 | 1.12 | 1.185 | 0.75 | 0.84 | 1.027 | 1.136 | 2.037 | 0.989 | 0.584 | 0.646 | 2.658 | 0.72 | 0.689 | 1.146 | 0.323 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16758
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RKYVIRRTLPAKEGKKPRT,RKRRRIALKNKRRVKRREE,KYVIRRTLPAKEGKKPRTKTPKIQRLVTPVTLQRKRRRIALKNKRRVKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.625
|
0.095
|
0.031
|
0.401
|
0.245
|
0.059
|
0.057
|
0.004
|
0.071
|
0.118
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013049
|
1.000
|
1.000
|
Hsc_gene_8674.t1
|
Hsc_gene_8674.t1
|
— |
Q90YR8.1 Small ribosomal subunit protein eS6 [Ictalurus punctatus]
|
KAF7639258.1 40S ribosomal protein S6, partial [Meloidogyne graminicola]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.898|GO:0110165_0.898|GO:0005622_0.828|GO:0043226_0.704|GO:0043229_0.699|GO:0005737_0.653|GO:0043228_0.643|GO:0043232_0.643|GO:0008150_0.639|GO:0003674_0.630|GO:0009987_0.555|GO:0016020_0.554|GO:0005829_0.529|GO:0032991_0.505
|
IPR001377+1-126_1-233+|IPR014401+1-238+|IPR018282+52-63+
|
SM01405+1-126+
|
PF01092+1-126+Ribosomal_protein_S6e
|
— |
PTHR11502+1-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-238
|
1.000
|
1-147
|
7oyb_G2
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
27570.260
|
11.484
|
40.000
|
38.655
|
6.723
|
55.462
|
44.538
|
28.151
|
10.504
|
40.756
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
14188.774
|
7033.733
|
10092.264
|
18951.583
|
19269.876
|
15058.454
|
10178.104
|
5643.537
|
21378.321
|
13706.816
|
16994.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.293
|
1.293
|
1.017
|
— |
-0.340
|
-0.555
|
-1.524
|
0.995
|
— | — | — | — | — |
No JSON data available for plots.