Hg_chrom9_TN10mRNA_17731
Organism: Heterodera glycines Gene Locus: chr9:5503707-5505818 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.345 | 0.769 | 1.127 | 0.712 | 1.171 | 0.742 | 0.492 | 1.24 | 1.01 | 1.173 | 1.565 | 0.972 | 1.033 | 0.397 | 2.108 | 0.767 | 1.016 | 0.877 | 0.318 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16759
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KTDRKQKSADTKHAKRRKTDRKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.838
|
0.065
|
0.036
|
0.288
|
0.034
|
0.017
|
0.024
|
0.003
|
0.017
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004985
|
2.000
|
1.000
|
Hsc_gene_8665.t1
|
Hsc_gene_8665.t1
|
— |
Q4PMC9.1 RNA-binding protein pno1 [Ixodes scapularis]
|
KAI1726823.1 RNA-binding protein pno1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723
|
GO:0005575_0.907|GO:0110165_0.898|GO:0005622_0.851|GO:0016020_0.822|GO:0043226_0.801|GO:0043229_0.792|GO:0043227_0.744|GO:0043231_0.722|GO:0008150_0.710|GO:0009987_0.659|GO:0043228_0.656|GO:0043232_0.655|GO:0005634_0.638|GO:0003674_0.630|GO:0031974_0.596|GO:0043233_0.595|GO:0070013_0.595|GO:0031981_0.591|GO:0005488_0.584|GO:0005737_0.577|GO:0005730_0.562|GO:0071840_0.530|GO:0032991_0.501
|
IPR036612+173-242_176-242+
|
— |
PF22891+176-241+Eukaryotic_type_KH-domain_(KH-domain_type_I)_(327.11.2)
|
— |
PTHR12826+45-242+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88
|
1.000
|
89-242
|
9n7b_SW
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
27425.590
|
10.586
|
21.000
|
36.364
|
7.851
|
54.132
|
45.868
|
23.140
|
13.223
|
46.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1109.562
|
2892.992
|
2426.487
|
1154.132
|
842.564
|
766.784
|
590.123
|
1633.567
|
1195.728
|
92.542
|
565.336
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.484
|
-1.463
|
-0.963
|
-0.486
|
— |
-0.367
|
0.984
|
-1.324
|
3.576
|
— |
3.352
|
— | — |
No JSON data available for plots.