Hg_chrom9_TN10mRNA_17732
Organism: Heterodera glycines Gene Locus: chr9:5505848-5508646 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 0.632 | 1.285 | 0.75 | 0.77 | 1.254 | 0.809 | 1.359 | 1.147 | 1.359 | 1.153 | 0.959 | 1.359 | 0.47 | 0.832 | 1.436 | 1.114 | 0.947 | 2.09 | 0.08 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16760
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.477
|
0.278
|
0.002
|
0.421
|
0.156
|
0.202
|
0.228
|
0.011
|
0.046
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004986
|
2.000
|
1.000
|
Hsc_gene_8664.t1
|
Hsc_gene_8664.t1
|
— | — |
KAI1726824.1 utp13 specific WD40 associated domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.818|GO:0110165_0.807|GO:0008150_0.782|GO:0005622_0.741|GO:0016020_0.693|GO:0009987_0.666|GO:0043226_0.631|GO:0003674_0.599|GO:0043229_0.570|GO:0043227_0.546|GO:0005488_0.519
|
IPR001680+9-49_16-48_70-111_76-110_77-110_132-171_138-170_139-180_178-217_183-216_185-226_220-259_222-259_227-268_262-313+|IPR015943+5-126_127-345+|IPR036322+14-312+
|
SM00320+9-49_70-111_132-171_178-217_220-259_262-313+
|
PF00400+16-48_76-110_138-170_183-216_222-259+WD_domain,_G-beta_repeat
|
— |
PTHR19854+19-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
40757.420
|
7.422
|
5.000
|
26.087
|
10.598
|
50.543
|
49.457
|
14.402
|
11.685
|
51.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
736.104
|
1637.864
|
1001.598
|
714.069
|
600.860
|
689.437
|
641.728
|
914.101
|
523.517
|
502.944
|
511.761
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.939
|
-1.335
|
-0.380
|
-0.282
|
0.214
|
— |
0.302
|
-0.366
|
— | — | — | — | — |
No JSON data available for plots.