Hg_chrom9_TN10mRNA_17734
Organism: Heterodera glycines Gene Locus: chr9:5513834-5515893 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.406 | 1.014 | 1.057 | 0.802 | 1.502 | 0.969 | 0.727 | 1.453 | 0.775 | 0.786 | 0.837 | 1.881 | 2.342 | 0.727 | 1.068 | 0.872 | 1.001 | 1.542 | 1.118 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16762
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.496
|
0.250
|
0.023
|
0.571
|
0.135
|
0.290
|
0.117
|
0.024
|
0.181
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013051
|
1.000
|
1.000
|
Hsc_gene_8672.t1
|
Hsc_gene_8672.t1
|
— | — |
KAF7629856.1 SHSP domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.942|GO:0050896_0.755|GO:0006950_0.678|GO:0009628_0.609|GO:0009266_0.573|GO:0009408_0.568
|
IPR001436+204-317+|IPR002068+231-337_246-317+|IPR008978+223-333_245-318+
|
— |
PF00011+246-317+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+204-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
322-344
|
1.000
|
1-321
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
39773.040
|
5.063
|
-9.000
|
28.488
|
15.698
|
48.837
|
51.163
|
13.663
|
14.826
|
48.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
603.199
|
54.070
|
167.774
|
192.524
|
383.782
|
398.621
|
1492.446
|
115.345
|
2.151
|
1585.673
|
907.020
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.403
|
1.694
|
0.309
|
0.964
|
— |
1.916
|
-1.900
|
3.839
|
-9.616
|
6.661
|
— | — | — |
No JSON data available for plots.