Hg_chrom9_TN10mRNA_17736
Organism: Heterodera glycines Gene Locus: chr9:5541281-5548484 Feature type: polypeptideProtein Sequence
Length: 813
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.673 | 1.087 | 0.403 | 0.679 | 0.533 | 2.681 | 0.718 | 2.522 | 0.519 | 1.064 | 0.54 | 1.664 | 0.718 | 1.916 | 0.853 | 1.388 | 0.706 | 0.615 | 0.095 | 0.145 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16764
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRLMADQIKLRRQQKKAR,RRLMADQIKLRRQQKKARV
|
— | — |
63-111
|
0.970
|
— | — |
0.000
|
— | — |
0.803
|
0.165
|
0.009
|
0.388
|
0.032
|
0.026
|
0.033
|
0.021
|
0.062
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013053
|
1.000
|
1.000
|
Hsc_gene_8666.t1
|
Hsc_gene_8666.t1
|
— |
O18214.1 Protein male abnormal 3 [Caenorhabditis elegans]
|
KHN78466.1 Protein male abnormal 3, partial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006355|GO:0043565
|
GO:0008150_0.821|GO:0032501_0.698|GO:0032502_0.683|GO:0048856_0.683|GO:0003674_0.666|GO:0005488_0.666|GO:0009987_0.662|GO:0007275_0.638|GO:0003676_0.584|GO:0097159_0.584|GO:0065007_0.558|GO:0050789_0.553|GO:0003677_0.549|GO:0005575_0.549|GO:0110165_0.549|GO:0050794_0.526|GO:0043565_0.521
|
IPR001275+116-161_116-169_120-149_120-167_184-231_184-238_188-218_188-236+|IPR026607+172-580+|IPR036407+111-161_113-159_181-230_181-231+
|
SM00301+116-169_184-238+
|
PF00751+116-161_184-231+DM_DNA_binding_domain
|
G3DSA:4.10.1040.10:FF:000001+181-231+doublesex-_and_mab-3-related_transcription_factor_1
|
PTHR12322+172-580+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-106;229-813
|
1.000
|
107-228
|
4yj0_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.958
|
85980.830
|
9.660
|
39.500
|
18.204
|
8.241
|
47.355
|
52.645
|
12.792
|
5.412
|
57.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
553.256
|
119.695
|
83.544
|
102.050
|
336.687
|
576.377
|
180.570
|
3273.330
|
38.804
|
639.296
|
381.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.752
|
-0.368
|
0.400
|
1.690
|
0.790
|
-1.664
|
2.411
|
-4.040
|
-4.188
|
— | — | — | — |
No JSON data available for plots.