Hg_chrom9_TN10mRNA_17738
Organism: Heterodera glycines Gene Locus: chr9:5551438-5555696 Feature type: polypeptideProtein Sequence
Length: 543
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 0.771 | 1.239 | 0.762 | 0.737 | 1.181 | 0.745 | 1.289 | 1.023 | 1.568 | 1.005 | 0.975 | 0.972 | 0.567 | 0.864 | 1.605 | 1.057 | 1.005 | 1.275 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16766
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.084
|
0.011
|
0.470
|
0.116
|
0.205
|
0.142
|
0.013
|
0.059
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004986
|
2.000
|
1.000
|
Hsc_gene_8664.t1
|
Hsc_gene_22545.t1;Hsc_gene_8664.t1
|
— |
Q2KJJ5.1 Transducin beta-like protein 3 [Bos taurus]
|
KAI1726824.1 utp13 specific WD40 associated domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006364|GO:0032040
|
GO:0005575_0.865|GO:0110165_0.863|GO:0008150_0.843|GO:0005622_0.800|GO:0009987_0.736|GO:0043226_0.693|GO:0016020_0.684|GO:0043229_0.625|GO:0003674_0.598|GO:0043227_0.566|GO:0005488_0.536
|
IPR001680+34-74_77-117_79-116_138-179_144-178_145-178_200-239_206-238_207-248_246-285_251-284_253-294_288-327_290-327_295-336_330-381+|IPR013934+402-540+|IPR015943+7-194_195-413+|IPR036322+41-380+
|
SM00320+34-74_77-117_138-179_200-239_246-285_288-327_330-381+
|
PF00400+79-116_144-178_206-238_251-284_290-327+WD_domain,_G-beta_repeat|PF08625+402-540+Utp13_specific_WD40_associated_domain
|
— |
PTHR19854+45-541+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-543
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
59413.600
|
7.115
|
5.000
|
24.678
|
8.840
|
50.276
|
49.724
|
13.444
|
11.234
|
53.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
708.398
|
610.889
|
491.993
|
699.912
|
697.693
|
551.200
|
1108.846
|
527.591
|
519.632
|
951.469
|
766.396
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.543
|
— |
0.618
|
— |
-0.325
|
1.020
|
— |
1.215
|
— | — | — | — | — |
No JSON data available for plots.