Hg_chrom9_TN10mRNA_17739
Organism: Heterodera glycines Gene Locus: chr9:5555928-5556842 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 0.488 | 0.89 | 0.0 | 1.282 | 2.331 | 0.333 | 1.399 | 1.399 | 0.756 | 0.954 | 2.879 | 2.914 | 0.807 | 1.284 | 0.799 | 0.917 | 0.742 | 0.538 | 1.44 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16767
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.072
|
0.032
|
0.347
|
0.324
|
0.657
|
0.243
|
0.014
|
0.144
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013054
|
1.000
|
1.000
|
Hsc_gene_8663.t1
|
Hsc_gene_8663.t1
|
— |
O02173.1 Probable trafficking protein particle complex subunit 2 [Caenorhabditis elegans]
|
KAH7727943.1 Protein SEDL-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888
|
GO:0005575_0.918|GO:0110165_0.799|GO:0008150_0.788|GO:0005622_0.762|GO:0016020_0.744|GO:0043226_0.724|GO:0005737_0.721|GO:0043229_0.705|GO:0043227_0.676|GO:0043231_0.659|GO:0071944_0.608|GO:0009987_0.604|GO:0005886_0.596|GO:0005773_0.538|GO:0012505_0.525
|
IPR006722+7-141_13-139+|IPR011012+7-141+
|
— |
PF04628+13-139+Sedlin,_N-terminal_conserved_region
|
— |
PTHR12403+7-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
1h3q_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
17245.740
|
7.397
|
2.000
|
27.972
|
18.881
|
50.350
|
49.650
|
15.385
|
12.587
|
34.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1016.633
|
1078.943
|
477.290
|
489.731
|
545.191
|
482.023
|
361.825
|
419.344
|
420.948
|
2686.679
|
1715.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.407
|
-1.277
|
0.146
|
— | — |
-0.407
|
-0.305
|
— | — | — | — | — | — |
No JSON data available for plots.