Hg_chrom9_TN10mRNA_17741
Organism: Heterodera glycines Gene Locus: chr9:5559724-5562508 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.08 | 0.885 | 0.458 | 1.032 | 0.908 | 0.869 | 0.885 | 0.787 | 1.375 | 0.67 | 1.822 | 1.536 | 0.893 | 1.4 | 1.264 | 0.907 | 0.872 | 0.681 | 1.041 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom9_TN10gene_16769
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.928
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion|endoplasmic_reticulum
|
— |
KKRP,KPRK,RKKR,RADKRRT,RKLAMVGASVLRRKYV
|
— | — |
2-33
|
0.955
|
— | — |
0.000
|
— | — |
0.183
|
0.676
|
0.166
|
0.212
|
0.813
|
0.119
|
0.227
|
0.516
|
0.111
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0013056
|
1.000
|
1.000
|
Hsc_gene_8657.t1
|
Hsc_gene_8657.t1
|
— |
Q5E9H5.1 Mitochondrial chaperone BCS1 [Bos taurus]
|
KAI6191522.1 BCS1-like protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.785|GO:0110165_0.783|GO:0008150_0.689|GO:0016020_0.686|GO:0005622_0.682|GO:0005737_0.619|GO:0043226_0.611|GO:0043229_0.597|GO:0043227_0.581|GO:0043231_0.562
|
IPR003593+250-384+|IPR003959+254-381+|IPR003960+352-370+|IPR014851+48-219_50-219+|IPR027417+206-382_207-427+|IPR050747+132-444+
|
SM00382+250-384+|SM01024+48-219+
|
PF00004+254-381+ATPase_family_associated_with_various_cellular_activities_(AAA)|PF08740+50-219+BCS1_N_terminal
|
G3DSA:3.40.50.300:FF:000768+209-382+Probable_mitochondrial_chaperone_bcs1
|
PTHR23070+132-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
6u1y_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
50547.430
|
7.692
|
5.000
|
24.115
|
11.726
|
46.681
|
53.319
|
13.053
|
11.062
|
50.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
713.355
|
507.832
|
672.308
|
760.007
|
844.716
|
675.360
|
1325.389
|
525.814
|
520.262
|
738.945
|
645.223
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.174
|
0.445
|
0.287
|
— |
-0.308
|
0.983
|
-0.462
|
1.475
|
— | — | — | — | — |
No JSON data available for plots.